IL_4UG0_109

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_109 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.1767

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

4UG0|1|L5|G|4400
4UG0|1|L5|G|4401
*
4UG0|1|L5|U|4442
4UG0|1|L5|C|4443
4UG0|1|L5|C|4444

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S RIBOSOMAL PROTEIN L3

Chain LI

60S RIBOSOMAL PROTEIN L10-LIKE

Chain Lb

60S RIBOSOMAL PROTEIN L29