IL_4UG0_127

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_127 not in the Motif Atlas

Geometric match to IL_3R1C_011

Geometric discrepancy: 0.1991

The information below is about IL_3R1C_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4UG0|1|L5|U|4638
4UG0|1|L5|G|4639
4UG0|1|L5|C|4640
*
4UG0|1|L5|G|4659
4UG0|1|L5|G|4660
4UG0|1|L5|G|4661

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LW

60S RIBOSOMAL PROTEIN L24

Chain Ld

60S RIBOSOMAL PROTEIN L31