IL_4UG0_128

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

4UG0|1|L5|A|4656, 4UG0|1|L5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_128 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.2559

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4UG0|1|L5|U|4641
4UG0|1|L5|U|4642
*
4UG0|1|L5|A|4655
4UG0|1|L5|A|4656
4UG0|1|L5|U|4657
4UG0|1|L5|G|4658

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S RIBOSOMAL PROTEIN L19

Chain Ld

60S RIBOSOMAL PROTEIN L31