IL_4UG0_131

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGC*GAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_131 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3717

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4UG0|1|L5|G|4742
4UG0|1|L5|G|4743
4UG0|1|L5|A|4744
4UG0|1|L5|G|4745
4UG0|1|L5|C|4746
*
4UG0|1|L5|G|4954
4UG0|1|L5|A|4955
4UG0|1|L5|A|4956
4UG0|1|L5|C|4957
4UG0|1|L5|C|4958

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lf

60S RIBOSOMAL PROTEIN L35A