IL_4UG0_137

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_137 not in the Motif Atlas

Geometric match to IL_5UNE_003

Geometric discrepancy: 0.16

The information below is about IL_5UNE_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4UG0|1|L5|G|4992
4UG0|1|L5|G|4993
4UG0|1|L5|G|4994
*
4UG0|1|L5|C|5057
4UG0|1|L5|A|5058
4UG0|1|L5|C|5059

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S RIBOSOMAL PROTEIN L3

Chain Ld

60S RIBOSOMAL PROTEIN L31