IL_4UG0_161

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_161 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.223

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4UG0|1|S2|U|110
4UG0|1|S2|A|111
4UG0|1|S2|U|112
*
4UG0|1|S2|A|349
4UG0|1|S2|C|350
4UG0|1|S2|G|351

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S RIBOSOMAL PROTEIN S4, X ISOFORM

Chain SI

40S RIBOSOMAL PROTEIN S8

Chain SL

40S RIBOSOMAL PROTEIN S11