IL_4UG0_231

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_231 not in the Motif Atlas

Geometric match to IL_7ECO_006

Geometric discrepancy: 0.3192

The information below is about IL_7ECO_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4UG0|1|L5|G|978
4UG0|1|L5|C|979
4UG0|1|L5|U|980
*
4UG0|1|L5|A|1274
4UG0|1|L5|G|1275
4UG0|1|L5|C|1276

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S RIBOSOMAL PROTEIN L6