IL_4UG0_240

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGU*ACUCACCU

Length

48 nucleotides

Bulged bases

4UG0|1|L5|G|1973, 4UG0|1|L5|G|1975, 4UG0|1|L5|A|1979, 4UG0|1|L5|U|1980, 4UG0|1|L5|G|1981, 4UG0|1|L5|A|1984, 4UG0|1|L5|C|1987, 4UG0|1|L5|G|1988, 4UG0|1|L5|G|1989, 4UG0|1|L5|A|1990, 4UG0|1|L5|U|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|L5|A|1967
4UG0|1|L5|G|1968
4UG0|1|L5|G|1969
4UG0|1|L5|A|1970
4UG0|1|L5|C|1971
4UG0|1|L5|G|1972
4UG0|1|L5|G|1973
4UG0|1|L5|U|1974
4UG0|1|L5|G|1975
4UG0|1|L5|G|1976
4UG0|1|L5|C|1977
4UG0|1|L5|C|1978
4UG0|1|L5|A|1979
4UG0|1|L5|U|1980
4UG0|1|L5|G|1981
4UG0|1|L5|G|1982
4UG0|1|L5|A|1983
4UG0|1|L5|A|1984
4UG0|1|L5|G|1985
4UG0|1|L5|U|1986
4UG0|1|L5|C|1987
4UG0|1|L5|G|1988
4UG0|1|L5|G|1989
4UG0|1|L5|A|1990
4UG0|1|L5|A|1991
4UG0|1|L5|U|1992
4UG0|1|L5|C|1993
4UG0|1|L5|C|1994
4UG0|1|L5|G|1995
4UG0|1|L5|C|1996
4UG0|1|L5|U|1997
4UG0|1|L5|A|1998
4UG0|1|L5|A|1999
4UG0|1|L5|G|2000
4UG0|1|L5|G|2001
4UG0|1|L5|A|2002
4UG0|1|L5|G|2003
4UG0|1|L5|U|2004
4UG0|1|L5|G|2005
4UG0|1|L5|U|2006
*
4UG0|1|L5|A|2013
4UG0|1|L5|C|2014
4UG0|1|L5|U|2015
4UG0|1|L5|C|2016
4UG0|1|L5|A|2017
4UG0|1|L5|C|2018
4UG0|1|L5|C|2019
4UG0|1|L5|U|2020

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S RIBOSOMAL PROTEIN L10-LIKE

Chain Lm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40