IL_4UG0_253

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUCGGAUAG*UGCGGAGUGC

Length

21 nucleotides

Bulged bases

4UG0|1|L5|C|4756, 4UG0|1|L5|C|4757, 4UG0|1|L5|U|4763, 4UG0|1|L5|C|4871, 4UG0|1|L5|G|4872, 4UG0|1|L5|A|4874, 4UG0|1|L5|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|L5|G|4755
4UG0|1|L5|C|4756
4UG0|1|L5|C|4757
4UG0|1|L5|U|4758
4UG0|1|L5|C|4759
4UG0|1|L5|G|4760
4UG0|1|L5|G|4761
4UG0|1|L5|A|4762
4UG0|1|L5|U|4763
4UG0|1|L5|A|4764
4UG0|1|L5|G|4765
*
4UG0|1|L5|U|4869
4UG0|1|L5|G|4870
4UG0|1|L5|C|4871
4UG0|1|L5|G|4872
4UG0|1|L5|G|4873
4UG0|1|L5|A|4874
4UG0|1|L5|G|4875
4UG0|1|L5|U|4876
4UG0|1|L5|G|4877
4UG0|1|L5|C|4878

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S RIBOSOMAL PROTEIN L6

Chain LH

60S RIBOSOMAL PROTEIN L9

Chain LM

60S RIBOSOMAL PROTEIN L14

Chain LO

60S RIBOSOMAL PROTEIN L13A

Chain LS

60S RIBOSOMAL PROTEIN L18A