3D structure

PDB id
4UJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CUCGUGGGGG*CGG
Length
13 nucleotides
Bulged bases
4UJC|1|A2|G|185, 4UJC|1|A2|G|188
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4UJC_007 not in the Motif Atlas
Geometric match to IL_7A0S_042
Geometric discrepancy: 0.2723
The information below is about IL_7A0S_042
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

4UJC|1|A2|C|180
4UJC|1|A2|U|181
4UJC|1|A2|C|182
4UJC|1|A2|G|183
4UJC|1|A2|U|184
4UJC|1|A2|G|185
4UJC|1|A2|G|186
4UJC|1|A2|G|187
4UJC|1|A2|G|188
4UJC|1|A2|G|189
*
4UJC|1|A2|C|246
4UJC|1|A2|G|247
4UJC|1|A2|G|248

Current chains

Chain A2
28S RIBOSOMAL RNA

Nearby chains

Chain A3
5.8S ribosomal RNA; 5.8S rRNA
Chain BC
60S RIBOSOMAL PROTEIN L4
Chain BL
60S RIBOSOMAL PROTEIN L13
Chain BY
60S RIBOSOMAL PROTEIN L26
Chain Bh
60S RIBOSOMAL PROTEIN UL29
Chain Bj
60S RIBOSOMAL PROTEIN L37

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2901 s