IL_4UJC_007
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CUCGUGGGGG*CGG
- Length
- 13 nucleotides
- Bulged bases
- 4UJC|1|A2|G|185, 4UJC|1|A2|G|188
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_007 not in the Motif Atlas
- Geometric match to IL_7A0S_042
- Geometric discrepancy: 0.2723
- The information below is about IL_7A0S_042
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
4UJC|1|A2|C|180
4UJC|1|A2|U|181
4UJC|1|A2|C|182
4UJC|1|A2|G|183
4UJC|1|A2|U|184
4UJC|1|A2|G|185
4UJC|1|A2|G|186
4UJC|1|A2|G|187
4UJC|1|A2|G|188
4UJC|1|A2|G|189
*
4UJC|1|A2|C|246
4UJC|1|A2|G|247
4UJC|1|A2|G|248
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S RIBOSOMAL PROTEIN L4
- Chain BL
- 60S RIBOSOMAL PROTEIN L13
- Chain BY
- 60S RIBOSOMAL PROTEIN L26
- Chain Bh
- 60S RIBOSOMAL PROTEIN UL29
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37
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