IL_4UJC_013

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_013 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1694

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4UJC|1|A2|C|450
4UJC|1|A2|C|451
4UJC|1|A2|G|452
*
4UJC|1|A2|C|683
4UJC|1|A2|A|684
4UJC|1|A2|G|685

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BE

60S RIBOSOMAL PROTEIN L6

Chain Bt

60S RIBOSOMAL PROTEIN L28