IL_4UJC_023

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGAAGGCC*GCAGCAGCAC

Length

18 nucleotides

Bulged bases

4UJC|1|A2|C|912

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|718
4UJC|1|A2|G|719
4UJC|1|A2|A|720
4UJC|1|A2|A|721
4UJC|1|A2|G|722
4UJC|1|A2|G|723
4UJC|1|A2|C|724
4UJC|1|A2|C|725
*
4UJC|1|A2|G|911
4UJC|1|A2|C|912
4UJC|1|A2|A|913
4UJC|1|A2|G|914
4UJC|1|A2|C|915
4UJC|1|A2|A|916
4UJC|1|A2|G|917
4UJC|1|A2|C|918
4UJC|1|A2|A|919
4UJC|1|A2|C|920

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BF

60S RIBOSOMAL PROTEIN L7

Chain BM

60S RIBOSOMAL PROTEIN L14

Chain BS

60S RIBOSOMAL PROTEIN L18A