IL_4UJC_038

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_038 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2177

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4UJC|1|A2|C|1411
4UJC|1|A2|G|1412
4UJC|1|A2|A|1413
4UJC|1|A2|G|1414
*
4UJC|1|A2|C|1430
4UJC|1|A2|G|1431
4UJC|1|A2|A|1432
4UJC|1|A2|G|1433

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BF

60S RIBOSOMAL PROTEIN L7

Chain BQ

60S RIBOSOMAL PROTEIN L18