IL_4UJC_050

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

4UJC|1|A2|G|1703

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_050 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.2271

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4UJC|1|A2|A|1702
4UJC|1|A2|G|1703
4UJC|1|A2|U|1704
*
4UJC|1|A2|A|1816
4UJC|1|A2|U|1817

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BF

60S RIBOSOMAL PROTEIN L7

Chain BT

60S RIBOSOMAL PROTEIN L21

Chain Bb

60S RIBOSOMAL PROTEIN L29