IL_4UJC_054

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_054 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.2368

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4UJC|1|A2|A|1725
4UJC|1|A2|U|1726
4UJC|1|A2|U|1727
4UJC|1|A2|A|1728
*
4UJC|1|A2|U|1760
4UJC|1|A2|U|1761
4UJC|1|A2|C|1762
4UJC|1|A2|U|1763

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BI

60S RIBOSOMAL PROTEIN L10