IL_4UJC_055

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGAG*CUAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_055 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.3395

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

4UJC|1|A2|A|1728
4UJC|1|A2|G|1729
4UJC|1|A2|A|1730
4UJC|1|A2|G|1731
*
4UJC|1|A2|C|1757
4UJC|1|A2|U|1758
4UJC|1|A2|A|1759
4UJC|1|A2|U|1760

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BI

60S RIBOSOMAL PROTEIN L10