IL_4UJC_056

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUCUU*AAC

Length

8 nucleotides

Bulged bases

4UJC|1|A2|U|1733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_056 not in the Motif Atlas

Geometric match to IL_4V84_070

Geometric discrepancy: 0.3667

The information below is about IL_4V84_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23164.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4UJC|1|A2|G|1732
4UJC|1|A2|U|1733
4UJC|1|A2|C|1734
4UJC|1|A2|U|1735
4UJC|1|A2|U|1736
*
4UJC|1|A2|A|1754
4UJC|1|A2|A|1755
4UJC|1|A2|C|1756

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BI

60S RIBOSOMAL PROTEIN L10

Chain BJ

60S RIBOSOMAL PROTEIN L11