IL_4UJC_058

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

4UJC|1|A2|G|1794

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_058 not in the Motif Atlas

Homologous match to IL_5TBW_045

Geometric discrepancy: 0.4786

The information below is about IL_5TBW_045

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4UJC|1|A2|C|1793
4UJC|1|A2|G|1794
4UJC|1|A2|C|1795
*
4UJC|1|A2|G|1802
4UJC|1|A2|G|1803

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BT

60S RIBOSOMAL PROTEIN L21

Chain Bb

60S RIBOSOMAL PROTEIN L29