IL_4UJC_062

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_062 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.2962

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

4UJC|1|A2|C|1898
4UJC|1|A2|C|1899
4UJC|1|A2|G|1900
*
4UJC|1|A2|C|2040
4UJC|1|A2|G|2041

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BF

60S RIBOSOMAL PROTEIN L7

Chain BM

60S RIBOSOMAL PROTEIN L14

Chain BO

60S RIBOSOMAL PROTEIN L13A

Chain BS

60S RIBOSOMAL PROTEIN L18A

Chain Bf

60S RIBOSOMAL PROTEIN L35A