IL_4UJC_079

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

4UJC|1|A2|A|2702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_079 not in the Motif Atlas

Geometric match to IL_4L8H_001

Geometric discrepancy: 0.369

The information below is about IL_4L8H_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4UJC|1|A2|C|2590
4UJC|1|A2|C|2591
*
4UJC|1|A2|G|2701
4UJC|1|A2|A|2702
4UJC|1|A2|G|2703

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19

Chain Bg

60S RIBOSOMAL PROTEIN L34