IL_4UJC_088

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4UJC|1|A2|U|2857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_088 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.139

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4UJC|1|A2|C|2844
4UJC|1|A2|G|2845
4UJC|1|A2|U|2846
4UJC|1|A2|A|2847
4UJC|1|A2|A|2848
4UJC|1|A2|C|2849
*
4UJC|1|A2|G|2854
4UJC|1|A2|G|2855
4UJC|1|A2|A|2856
4UJC|1|A2|U|2857
4UJC|1|A2|A|2858
4UJC|1|A2|A|2859
4UJC|1|A2|G|2860

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain Bn

60S RIBOSOMAL PROTEIN L41

Chain Bp

60S RIBOSOMAL PROTEIN L37A

Chain C1

Small subunit ribosomal RNA; SSU rRNA