IL_4UJC_099

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_099 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.1593

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

4UJC|1|A2|G|3749
4UJC|1|A2|C|3750
*
4UJC|1|A2|G|3780
4UJC|1|A2|C|3781
4UJC|1|A2|A|3782
4UJC|1|A2|U|3783

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain AA

Transfer RNA; tRNA

Chain AB

EIF5B

Chain Bn

60S RIBOSOMAL PROTEIN L41