IL_4UJC_102

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

4UJC|1|A2|A|3870, 4UJC|1|A2|C|4520

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_102 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.3328

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4UJC|1|A2|G|3869
4UJC|1|A2|A|3870
4UJC|1|A2|A|3871
*
4UJC|1|A2|U|4518
4UJC|1|A2|A|4519
4UJC|1|A2|C|4520
4UJC|1|A2|C|4521

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BP

60S RIBOSOMAL PROTEIN L17