IL_4UJC_103

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUUG*CAC

Length

7 nucleotides

Bulged bases

4UJC|1|A2|U|3883

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_103 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.2272

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4UJC|1|A2|G|3882
4UJC|1|A2|U|3883
4UJC|1|A2|U|3884
4UJC|1|A2|G|3885
*
4UJC|1|A2|C|4347
4UJC|1|A2|A|4348
4UJC|1|A2|C|4349

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain Ba

60S RIBOSOMAL PROTEIN L27A

Chain Bb

60S RIBOSOMAL PROTEIN L29