IL_4UJC_108

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGGUGUAGAAUAA*UACU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|A|3923
4UJC|1|A2|G|3924
4UJC|1|A2|G|3925
4UJC|1|A2|U|3926
4UJC|1|A2|G|3927
4UJC|1|A2|U|3928
4UJC|1|A2|A|3929
4UJC|1|A2|G|3930
4UJC|1|A2|A|3931
4UJC|1|A2|A|3932
4UJC|1|A2|U|3933
4UJC|1|A2|A|3934
4UJC|1|A2|A|3935
*
4UJC|1|A2|U|4023
4UJC|1|A2|A|4024
4UJC|1|A2|C|4025
4UJC|1|A2|U|4026

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain AC

Internal ribosome entry site; IRES

Chain Bu

60S RIBOSOMAL PROTEIN L10A