IL_4UJC_110

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUGAGGCGGG*CCCGCUC

Length

17 nucleotides

Bulged bases

4UJC|1|A2|G|4052, 4UJC|1|A2|G|4054, 4UJC|1|A2|G|4055, 4UJC|1|A2|C|4122, 4UJC|1|A2|U|4123

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|4050
4UJC|1|A2|U|4051
4UJC|1|A2|G|4052
4UJC|1|A2|A|4053
4UJC|1|A2|G|4054
4UJC|1|A2|G|4055
4UJC|1|A2|C|4056
4UJC|1|A2|G|4057
4UJC|1|A2|G|4058
4UJC|1|A2|G|4059
*
4UJC|1|A2|C|4118
4UJC|1|A2|C|4119
4UJC|1|A2|C|4120
4UJC|1|A2|G|4121
4UJC|1|A2|C|4122
4UJC|1|A2|U|4123
4UJC|1|A2|C|4124

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain BA

60S RIBOSOMAL PROTEIN L8

Chain BG

60S RIBOSOMAL PROTEIN L7A

Chain BX

60S RIBOSOMAL PROTEIN L23A