IL_4UJC_122

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

4UJC|1|A2|A|4478, 4UJC|1|A2|C|4479

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_122 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.2325

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4UJC|1|A2|C|4418
4UJC|1|A2|U|4419
*
4UJC|1|A2|A|4477
4UJC|1|A2|A|4478
4UJC|1|A2|C|4479
4UJC|1|A2|G|4480

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BV

60S RIBOSOMAL PROTEIN L23