IL_4UJC_135

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_135 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2598

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4UJC|1|A2|G|4702
4UJC|1|A2|A|4703
4UJC|1|A2|G|4704
4UJC|1|A2|C|4705
*
4UJC|1|A2|G|4909
4UJC|1|A2|A|4910
4UJC|1|A2|A|4911
4UJC|1|A2|C|4912

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Bf

60S RIBOSOMAL PROTEIN L35A