IL_4UJC_148

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

4UJC|1|A2|G|4996

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|U|4958
4UJC|1|A2|C|4959
4UJC|1|A2|G|4960
4UJC|1|A2|U|4961
4UJC|1|A2|A|4962
4UJC|1|A2|C|4963
4UJC|1|A2|G|4964
*
4UJC|1|A2|U|4994
4UJC|1|A2|U|4995
4UJC|1|A2|G|4996
4UJC|1|A2|A|4997
4UJC|1|A2|A|4998
4UJC|1|A2|A|4999

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BW

60S RIBOSOMAL PROTEIN L24

Chain Bd

60S RIBOSOMAL PROTEIN L31