IL_4UJC_155
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_155 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.2987
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4UJC|1|A4|G|21
4UJC|1|A4|A|22
4UJC|1|A4|A|23
4UJC|1|A4|C|24
4UJC|1|A4|G|25
4UJC|1|A4|C|26
4UJC|1|A4|G|27
*
4UJC|1|A4|C|52
4UJC|1|A4|U|53
4UJC|1|A4|A|54
4UJC|1|A4|A|55
4UJC|1|A4|G|56
4UJC|1|A4|C|57
Current chains
- Chain A4
- 5S RIBOSOMAL RNA
Nearby chains
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BJ
- 60S RIBOSOMAL PROTEIN L11
Coloring options: