IL_4UJC_175

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

4UJC|1|C1|G|113, 4UJC|1|C1|G|114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_175 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.2254

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4UJC|1|C1|U|112
4UJC|1|C1|G|113
4UJC|1|C1|G|114
4UJC|1|C1|U|115
*
4UJC|1|C1|A|348
4UJC|1|C1|A|349

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CE

40S RIBOSOMAL PROTEIN ES4

Chain CI

40S RIBOSOMAL PROTEIN ES8

Chain CL

40S RIBOSOMAL PROTEIN US17