IL_4UJC_187

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_187 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1796

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

4UJC|1|C1|C|491
4UJC|1|C1|C|492
4UJC|1|C1|A|493
4UJC|1|C1|C|494
4UJC|1|C1|U|495
*
4UJC|1|C1|A|508
4UJC|1|C1|G|509

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CE

40S RIBOSOMAL PROTEIN ES4

Chain CJ

40S RIBOSOMAL PROTEIN US4

Chain CY

40S RIBOSOMAL PROTEIN ES24