IL_4UJC_237

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_237 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1699

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

4UJC|1|C1|G|1604
4UJC|1|C1|G|1605
4UJC|1|C1|G|1606
4UJC|1|C1|A|1607
4UJC|1|C1|U|1608
4UJC|1|C1|C|1609
4UJC|1|C1|G|1610
*
4UJC|1|C1|C|1629
4UJC|1|C1|A|1630
4UJC|1|C1|U|1631
4UJC|1|C1|G|1632
4UJC|1|C1|A|1633
4UJC|1|C1|A|1634
4UJC|1|C1|C|1635

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CS

40S RIBOSOMAL PROTEIN US13

Chain CT

40S RIBOSOMAL PROTEIN ES19