IL_4UJC_242

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_242 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.1902

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

4UJC|1|C1|C|1713
4UJC|1|C1|U|1714
4UJC|1|C1|A|1715
4UJC|1|C1|C|1716
*
4UJC|1|C1|G|1817
4UJC|1|C1|A|1818
4UJC|1|C1|A|1819
4UJC|1|C1|G|1820

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain Bn

60S RIBOSOMAL PROTEIN L41

Chain CX

40S RIBOSOMAL PROTEIN US12