IL_4UJC_252

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCCGCUCCCCGGCGCCG*CGCGCGCCCGGG

Length

29 nucleotides

Bulged bases

4UJC|1|A2|G|254, 4UJC|1|A2|C|257

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|163
4UJC|1|A2|C|164
4UJC|1|A2|C|165
4UJC|1|A2|G|166
4UJC|1|A2|C|167
4UJC|1|A2|U|168
4UJC|1|A2|C|169
4UJC|1|A2|C|170
4UJC|1|A2|C|171
4UJC|1|A2|C|172
4UJC|1|A2|G|173
4UJC|1|A2|G|174
4UJC|1|A2|C|175
4UJC|1|A2|G|176
4UJC|1|A2|C|177
4UJC|1|A2|C|178
4UJC|1|A2|G|179
*
4UJC|1|A2|C|249
4UJC|1|A2|G|250
4UJC|1|A2|C|251
4UJC|1|A2|G|252
4UJC|1|A2|C|253
4UJC|1|A2|G|254
4UJC|1|A2|C|255
4UJC|1|A2|C|256
4UJC|1|A2|C|257
4UJC|1|A2|G|258
4UJC|1|A2|G|259
4UJC|1|A2|G|260

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BL

60S RIBOSOMAL PROTEIN L13

Chain Bh

60S RIBOSOMAL PROTEIN UL29