IL_4UJC_254

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAACUUU*AGAGAGUUCAAGAGGGC

Length

24 nucleotides

Bulged bases

4UJC|1|A2|A|380, 4UJC|1|A2|G|400, 4UJC|1|A2|G|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|378
4UJC|1|A2|A|379
4UJC|1|A2|A|380
4UJC|1|A2|C|381
4UJC|1|A2|U|382
4UJC|1|A2|U|383
4UJC|1|A2|U|384
*
4UJC|1|A2|A|389
4UJC|1|A2|G|390
4UJC|1|A2|A|391
4UJC|1|A2|G|392
4UJC|1|A2|A|393
4UJC|1|A2|G|394
4UJC|1|A2|U|395
4UJC|1|A2|U|396
4UJC|1|A2|C|397
4UJC|1|A2|A|398
4UJC|1|A2|A|399
4UJC|1|A2|G|400
4UJC|1|A2|A|401
4UJC|1|A2|G|402
4UJC|1|A2|G|403
4UJC|1|A2|G|404
4UJC|1|A2|C|405

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain BP

60S RIBOSOMAL PROTEIN L17

Chain BY

60S RIBOSOMAL PROTEIN L26

Chain Bl

60S RIBOSOMAL PROTEIN L39