IL_4UJC_268

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCGGUAAA*UUUAAAUGG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|1710
4UJC|1|A2|C|1711
4UJC|1|A2|G|1712
4UJC|1|A2|G|1713
4UJC|1|A2|U|1714
4UJC|1|A2|A|1715
4UJC|1|A2|A|1716
4UJC|1|A2|A|1717
*
4UJC|1|A2|U|1769
4UJC|1|A2|U|1770
4UJC|1|A2|U|1771
4UJC|1|A2|A|1772
4UJC|1|A2|A|1773
4UJC|1|A2|A|1774
4UJC|1|A2|U|1775
4UJC|1|A2|G|1776
4UJC|1|A2|G|1777

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BF

60S RIBOSOMAL PROTEIN L7

Chain BI

60S RIBOSOMAL PROTEIN L10

Chain BT

60S RIBOSOMAL PROTEIN L21