IL_4UJC_278
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CUGGAAUG*CGAGAGAG
- Length
- 16 nucleotides
- Bulged bases
- 4UJC|1|A2|A|2637, 4UJC|1|A2|U|2638, 4UJC|1|A2|A|2651
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJC|1|A2|C|2632
4UJC|1|A2|U|2633
4UJC|1|A2|G|2634
4UJC|1|A2|G|2635
4UJC|1|A2|A|2636
4UJC|1|A2|A|2637
4UJC|1|A2|U|2638
4UJC|1|A2|G|2639
*
4UJC|1|A2|C|2649
4UJC|1|A2|G|2650
4UJC|1|A2|A|2651
4UJC|1|A2|G|2652
4UJC|1|A2|A|2653
4UJC|1|A2|G|2654
4UJC|1|A2|A|2655
4UJC|1|A2|G|2656
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain BR
- 60S RIBOSOMAL PROTEIN L19
- Chain BZ
- 60S RIBOSOMAL PROTEIN L27
- Chain Bc
- 60S RIBOSOMAL PROTEIN L30
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34
- Chain Bp
- 60S RIBOSOMAL PROTEIN L37A
- Chain CN
- 40S RIBOSOMAL PROTEIN US15
Coloring options: