IL_4UJC_282

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CAUGAG*CUGAUCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|3917
4UJC|1|A2|A|3918
4UJC|1|A2|U|3919
4UJC|1|A2|G|3920
4UJC|1|A2|A|3921
4UJC|1|A2|G|3922
*
4UJC|1|A2|C|4027
4UJC|1|A2|U|4028
4UJC|1|A2|G|4029
4UJC|1|A2|A|4030
4UJC|1|A2|U|4031
4UJC|1|A2|C|4032
4UJC|1|A2|G|4033

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain Bi

60S RIBOSOMAL PROTEIN L36

Chain CB

40S RIBOSOMAL PROTEIN ES1