IL_4UJC_284

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGAG*CGCCGGUGAAAUACC

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|3938
4UJC|1|A2|G|3939
4UJC|1|A2|G|3940
4UJC|1|A2|A|3941
4UJC|1|A2|G|3942
*
4UJC|1|A2|C|4006
4UJC|1|A2|G|4007
4UJC|1|A2|C|4008
4UJC|1|A2|C|4009
4UJC|1|A2|G|4010
4UJC|1|A2|G|4011
4UJC|1|A2|U|4012
4UJC|1|A2|G|4013
4UJC|1|A2|A|4014
4UJC|1|A2|A|4015
4UJC|1|A2|A|4016
4UJC|1|A2|U|4017
4UJC|1|A2|A|4018
4UJC|1|A2|C|4019
4UJC|1|A2|C|4020

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain AC

Internal ribosome entry site; IRES

Chain Bu

60S RIBOSOMAL PROTEIN L10A