IL_4UJC_287

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUGCCAU*AGGCGAA

Length

14 nucleotides

Bulged bases

4UJC|1|A2|G|4679, 4UJC|1|A2|C|4680, 4UJC|1|A2|G|4681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|U|4539
4UJC|1|A2|U|4540
4UJC|1|A2|G|4541
4UJC|1|A2|C|4542
4UJC|1|A2|C|4543
4UJC|1|A2|A|4544
4UJC|1|A2|U|4545
*
4UJC|1|A2|A|4677
4UJC|1|A2|G|4678
4UJC|1|A2|G|4679
4UJC|1|A2|C|4680
4UJC|1|A2|G|4681
4UJC|1|A2|A|4682
4UJC|1|A2|A|4683

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BO

60S RIBOSOMAL PROTEIN L13A