IL_4UJC_301
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJC_301 not in the Motif Atlas
- Homologous match to IL_8P9A_382
- Geometric discrepancy: 0.3956
- The information below is about IL_8P9A_382
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4UJC|1|C1|U|116
4UJC|1|C1|C|117
4UJC|1|C1|C|118
4UJC|1|C1|U|119
4UJC|1|C1|U|120
4UJC|1|C1|U|121
*
4UJC|1|C1|A|343
4UJC|1|C1|U|344
4UJC|1|C1|U|345
4UJC|1|C1|C|346
4UJC|1|C1|G|347
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CE
- 40S RIBOSOMAL PROTEIN ES4
- Chain CI
- 40S RIBOSOMAL PROTEIN ES8
Coloring options: