IL_4UJC_307

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CACCAC*GUCCCUG

Length

13 nucleotides

Bulged bases

4UJC|1|C1|C|1215, 4UJC|1|C1|C|1216, 4UJC|1|C1|C|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|C1|C|1213
4UJC|1|C1|A|1214
4UJC|1|C1|C|1215
4UJC|1|C1|C|1216
4UJC|1|C1|A|1217
4UJC|1|C1|C|1218
*
4UJC|1|C1|G|1680
4UJC|1|C1|U|1681
4UJC|1|C1|C|1682
4UJC|1|C1|C|1683
4UJC|1|C1|C|1684
4UJC|1|C1|U|1685
4UJC|1|C1|G|1686

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain AA

Transfer RNA; tRNA

Chain CF

40S RIBOSOMAL PROTEIN US7

Chain CQ

40S RIBOSOMAL PROTEIN US9

Chain Cc

40S RIBOSOMAL PROTEIN ES28