IL_4UJC_318

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGCCC*GAGCGCU

Length

12 nucleotides

Bulged bases

4UJC|1|C1|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_318 not in the Motif Atlas

Geometric match to IL_6CZR_167

Geometric discrepancy: 0.3164

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4UJC|1|C1|G|1748
4UJC|1|C1|G|1749
4UJC|1|C1|C|1750
4UJC|1|C1|C|1751
4UJC|1|C1|C|1752
*
4UJC|1|C1|G|1780
4UJC|1|C1|A|1781
4UJC|1|C1|G|1782
4UJC|1|C1|C|1783
4UJC|1|C1|G|1784
4UJC|1|C1|C|1785
4UJC|1|C1|U|1786

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CG

40S RIBOSOMAL PROTEIN ES6