IL_4UJC_326

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGG*CGCCGU

Length

10 nucleotides

Bulged bases

4UJC|1|A2|G|1339, 4UJC|1|A2|G|1357, 4UJC|1|A2|C|1358, 4UJC|1|A2|C|1359, 4UJC|1|A2|G|1360

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|1338
4UJC|1|A2|G|1339
4UJC|1|A2|G|1340
4UJC|1|A2|G|1341
*
4UJC|1|A2|C|1356
4UJC|1|A2|G|1357
4UJC|1|A2|C|1358
4UJC|1|A2|C|1359
4UJC|1|A2|G|1360
4UJC|1|A2|U|1361

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BL

60S RIBOSOMAL PROTEIN L13

Chain BN

60S RIBOSOMAL PROTEIN L15