IL_4UJC_339

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

4UJC|1|C1|G|1207

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJC_339 not in the Motif Atlas

Homologous match to IL_8P9A_430

Geometric discrepancy: 0.3819

The information below is about IL_8P9A_430

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

4UJC|1|C1|G|1206
4UJC|1|C1|G|1207
4UJC|1|C1|A|1208
*
4UJC|1|C1|U|1691
4UJC|1|C1|U|1692

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain AC

Internal ribosome entry site; IRES

Chain Ca

40S RIBOSOMAL PROTEIN ES26