IL_4UJC_340
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GGACAGGAUUG*CUCGAUUCC
- Length
- 20 nucleotides
- Bulged bases
- 4UJC|1|C1|A|1284, 4UJC|1|C1|G|1285, 4UJC|1|C1|G|1286, 4UJC|1|C1|A|1287, 4UJC|1|C1|A|1313
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJC|1|C1|G|1280
4UJC|1|C1|G|1281
4UJC|1|C1|A|1282
4UJC|1|C1|C|1283
4UJC|1|C1|A|1284
4UJC|1|C1|G|1285
4UJC|1|C1|G|1286
4UJC|1|C1|A|1287
4UJC|1|C1|U|1288
4UJC|1|C1|U|1289
4UJC|1|C1|G|1290
*
4UJC|1|C1|C|1309
4UJC|1|C1|U|1310
4UJC|1|C1|C|1311
4UJC|1|C1|G|1312
4UJC|1|C1|A|1313
4UJC|1|C1|U|1314
4UJC|1|C1|U|1315
4UJC|1|C1|C|1316
4UJC|1|C1|C|1317
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CK
- 40S RIBOSOMAL PROTEIN ES10
- Chain CM
- 40S RIBOSOMAL PROTEIN ES12
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
- Chain Cf
- 40S RIBOSOMAL PROTEIN ES31
Coloring options: