IL_4UJD_001

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCGACCUCAG*CUGAGCGUCGC

Length

21 nucleotides

Bulged bases

4UJD|1|A3|C|150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|2
4UJD|1|A2|C|3
4UJD|1|A2|G|4
4UJD|1|A2|A|5
4UJD|1|A2|C|6
4UJD|1|A2|C|7
4UJD|1|A2|U|8
4UJD|1|A2|C|9
4UJD|1|A2|A|10
4UJD|1|A2|G|11
*
4UJD|1|A3|C|145
4UJD|1|A3|U|146
4UJD|1|A3|G|147
4UJD|1|A3|A|148
4UJD|1|A3|G|149
4UJD|1|A3|C|150
4UJD|1|A3|G|151
4UJD|1|A3|U|152
4UJD|1|A3|C|153
4UJD|1|A3|G|154
4UJD|1|A3|C|155

Current chains

Chain A2

28S Ribosomal RNA

Chain A3

5.8S Ribosomal RNA

Nearby chains

Chain AG

60S RIBOSOMAL PROTEIN L7A

Chain AN

60S RIBOSOMAL PROTEIN L15

Chain AX

60S RIBOSOMAL PROTEIN L23A