IL_4UJD_007
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CUCGUGGGGG*CGG
- Length
- 13 nucleotides
- Bulged bases
- 4UJD|1|A2|G|185, 4UJD|1|A2|G|188
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_007 not in the Motif Atlas
- Geometric match to IL_7A0S_042
- Geometric discrepancy: 0.2724
- The information below is about IL_7A0S_042
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
4UJD|1|A2|C|180
4UJD|1|A2|U|181
4UJD|1|A2|C|182
4UJD|1|A2|G|183
4UJD|1|A2|U|184
4UJD|1|A2|G|185
4UJD|1|A2|G|186
4UJD|1|A2|G|187
4UJD|1|A2|G|188
4UJD|1|A2|G|189
*
4UJD|1|A2|C|246
4UJD|1|A2|G|247
4UJD|1|A2|G|248
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- 60S RIBOSOMAL PROTEIN L4
- Chain AL
- 60S RIBOSOMAL PROTEIN L13
- Chain AY
- 60S RIBOSOMAL PROTEIN L26
- Chain Ah
- 60S RIBOSOMAL PROTEIN L35
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
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