IL_4UJD_008

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

4UJD|1|A2|A|340

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_008 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.1352

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4UJD|1|A2|G|339
4UJD|1|A2|A|340
4UJD|1|A2|C|341
*
4UJD|1|A3|G|25
4UJD|1|A3|C|26

Current chains

Chain A2

28S Ribosomal RNA

Chain A3

5.8S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AY

60S RIBOSOMAL PROTEIN L26

Chain Aj

60S RIBOSOMAL PROTEIN L37